Introduction
There’s something magical about the scent of caramel and spices wafting through your kitchen as the leaves begin to fall. When crisp air meets cozy cravings, one cookie captures the spirit of the season like no other: Caramel Apple Spice Thumbprints. These thumbprint cookies are the perfect blend of buttery dough, warm apple pie spice, and a rich pool of homemade caramel nestled in the center.
Inspired by snickerdoodles but made for autumn lovers, Caramel Apple Spice Thumbprints offer a soft, chewy bite that’s loaded with flavor. Whether you’re baking for a fall party, holiday cookie swap, or just craving a festive treat, these cookies are guaranteed to impress.
With just 30 minutes of prep, a little patience for chilling, and a simple caramel filling, you’ll have 24 spiced cookies that taste like fall in every bite. Ready to fill your home with cozy aromas and sweet satisfaction? Let’s dive into what makes these cookies so unforgettable.
Table of Contents
What Are Caramel Apple Spice Thumbprints?
Caramel Apple Spice Thumbprints are the ultimate fall twist on a classic cookie. At their core, thumbprint cookies are soft, buttery shortbread-style rounds with a center indentation—typically filled with jam or chocolate. But this spiced-up version brings serious autumn vibes by swapping in a cozy apple pie spice coating and a gooey caramel center that makes every bite unforgettable.
Unlike traditional thumbprint cookies, these are inspired by snickerdoodles—rolled in sugar and spice for that signature crackly exterior and warm cinnamon flavor. But it’s the caramel that sets them apart. Instead of fruit preserves, you’ll spoon smooth, slightly salted caramel into the thumbprint, giving each cookie a sweet-and-savory finish that perfectly complements the spiced dough.
They’re soft yet chewy, delicately spiced, and bursting with flavor. Think: apple pie meets sugar cookie, with a caramel drizzle on top. Whether served warm or cooled, these cookies strike the perfect balance of texture and taste—ideal for fall gatherings, festive cookie platters, or simply satisfying your seasonal sweet tooth.
Ingredients You’ll Need for Caramel Apple Spice Thumbprints
The magic of Caramel Apple Spice Thumbprints lies in their simplicity—classic ingredients brought together with a seasonal twist. From spiced sugar to velvety caramel, every element plays a key role in making these cookies the ultimate fall indulgence.
🧂 Topping
- 1/3 cup (67g) granulated sugar
- 1/2 teaspoon apple pie spice
This spiced sugar mix is what gives your Caramel Apple Spice Thumbprints their irresistible coating, similar to snickerdoodles but with a bold autumn flair.
🍪 Cookie Dough
- 2 1/2 cups (313g) all-purpose flour
- 1 1/2 teaspoons apple pie spice
- 1 teaspoon baking powder
- 1/4 teaspoon salt
- 1 cup (226g) unsalted butter, softened
- 3/4 cup (150g) granulated sugar
- 1 large egg, room temperature
- 1 1/2 teaspoons pure vanilla extract
These ingredients combine to create a soft, buttery dough that complements the spice blend and caramel center. They’re the perfect foundation for your Caramel Apple Spice Thumbprints.
🍯 Caramel Filling
- Homemade caramel sauce (or high-quality store-bought)
The heart of each cookie is a spoonful of gooey caramel. You can go with a sweet version or tone it down with a lightly salted caramel to balance the richness.
🥄 Substitutions & Tips
- Make your own apple pie spice: Blend 4 tsp cinnamon, 2 tsp nutmeg, 1 tsp cardamom.
- Butter alternatives: For dairy-free baking, use vegan butter sticks (not margarine).
- Egg replacements: Use a flax egg (1 tbsp flaxseed meal + 3 tbsp water).
- Flour swaps: Use a 1:1 gluten-free flour with xanthan gum for gluten-free thumbprints.
- Caramel shortcuts: Use thick, quality jarred caramel if you’re short on time.
These simple swaps let you enjoy Caramel Apple Spice Thumbprints whether you’re baking for dietary needs or just trying to use what’s in your pantry.

How to Make Caramel Apple Spice Thumbprints – Step by Step
The process for making Caramel Apple Spice Thumbprints is simple but rewarding. With a little chill time and some careful filling, you’ll be rewarded with bakery-worthy cookies that scream fall. Let’s break it down step by step:
1. Prepare the Spiced Sugar Topping
In a small bowl, mix together:
- 1/3 cup granulated sugar
- 1/2 teaspoon apple pie spice
This will coat your cookie dough balls and add that extra pop of warm, spiced sweetness to each bite.
2. Mix the Dry Ingredients
In a medium bowl, whisk together:
- 2 1/2 cups all-purpose flour
- 1 1/2 teaspoons apple pie spice
- 1 teaspoon baking powder
- 1/4 teaspoon salt
This dry blend ensures your Caramel Apple Spice Thumbprints have structure and just the right amount of flavor in every crumb.
3. Cream the Butter and Sugar
In a large mixing bowl (stand or hand mixer), beat:
- 1 cup softened unsalted butter
- 3/4 cup granulated sugar
Beat on medium-high speed for about 2 minutes until light and creamy. This step gives the cookies their soft and tender texture.
4. Add Wet Ingredients
Add to the creamed mixture:
- 1 large egg
- 1 1/2 teaspoons vanilla extract
Beat until fully combined, scraping down the bowl as needed to ensure even mixing.
5. Combine Wet and Dry
Gradually add the dry ingredients to the wet mixture on low speed. Mix until just combined—don’t overmix! You’ll be left with a thick, slightly sticky dough.
6. Shape the Dough Balls
Scoop and roll dough into 1-inch balls (about 1 tablespoon each). Roll each ball in the spiced sugar mixture until fully coated. Place them spaced 2–3 inches apart on a lined baking sheet.
7. Create the Thumbprint Indents
Use your thumb or the back of a rounded utensil (like a spatula handle) to gently press an indent in the center of each dough ball. If the dough cracks, gently push it back together with your fingers.
8. Chill the Cookies
Cover and chill the indented cookies for at least 2–3 hours (or up to 4 days). This helps them hold their shape and prevents spreading during baking.
9. Bake in Two Steps
Preheat your oven to 350°F (180°C).
Bake cookies for 12 minutes, then remove from the oven and immediately:
- Spoon 1/2 teaspoon of caramel into each indentation.
- If indents puffed up, gently re-press them before adding the caramel.
Return cookies to the oven for 1–2 more minutes to set the caramel.
10. Cool and Set
Let cookies cool on the baking sheet for 5 minutes before transferring them to a wire rack. The caramel will fully set within a couple of hours—if you can wait that long!

Expert Tips for Perfect Caramel Apple Spice Thumbprints
To make your Caramel Apple Spice Thumbprints truly unforgettable, pay attention to the small details. These baking tips will help you get the ideal texture, flavor, and look—every time.
1. Chill the Dough – Seriously
It’s tempting to skip, but chilling shaped Caramel Apple Spice Thumbprints prevents them from flattening or spreading. Refrigerate for a minimum of 2 hours, and they’ll bake up beautifully.
2. Use Softened Butter and Room Temp Egg
Cold ingredients don’t mix well. Make sure your butter is soft (not melted!) and your egg is at room temperature. This creates a smooth, fluffy dough and enhances the final cookie texture.
3. Thumbprint Depth Matters
Use your thumb or a rounded utensil to press a firm—but not deep—indent into each dough ball. If your Caramel Apple Spice Thumbprints lose their shape while baking, gently press again before adding caramel.
4. Thicker Caramel = Less Mess
Warm caramel can run too easily. If you’re using a homemade version, let it cool slightly. For jarred caramel, refrigerate for a few minutes to thicken before filling.
5. Don’t Crowd the Pan
Space each cookie at least 2–3 inches apart. This gives your Caramel Apple Spice Thumbprints room to expand and bake evenly without sticking together.
6. Let Them Rest
Once baked, let cookies cool on the tray for 5 minutes. The caramel center is fragile when hot, and moving them too early may ruin their shape.
7. Test One Before the Batch
Bake one cookie before committing to the full sheet. This lets you adjust caramel texture, dough spread, or indent depth if needed.
With these simple tips, your Caramel Apple Spice Thumbprints will be soft, spiced, and perfectly caramel-filled—every single time.
Flavor Variations & Creative Twists for Caramel Apple Spice Thumbprints
One of the best things about Caramel Apple Spice Thumbprints is how easily you can customize them. Whether you’re aiming for something new or adjusting for allergies, these creative twists will inspire your next batch.
🍂 1. Pumpkin-Spiced Thumbprints
Substitute apple pie spice with pumpkin pie spice and fill the centers with pumpkin caramel or spiced pumpkin butter. It’s a cozy alternative that still delivers fall in every bite.
🍏 2. Apple Pecan Caramel Crunch
Add a layer of texture by sprinkling chopped toasted pecans on top of the caramel filling. The result? A nutty, crunchy finish that makes your Caramel Apple Spice Thumbprints taste bakery-quality.
🧂 3. Salted Caramel Upgrade
Love sweet and salty? Use a salted caramel filling and top each cookie with a few flakes of sea salt. This elevates the classic Caramel Apple Spice Thumbprints into a gourmet treat.
🧈 4. Brown Butter Bonus
Before starting the dough, brown the butter and let it cool slightly. This small change adds depth and richness to the cookie base, enhancing the caramel and spice notes even more.
🌿 5. Gluten-Free & Still Delicious
Replace regular flour with a gluten-free 1:1 baking blend (with xanthan gum). Just be sure to chill the dough well so your Caramel Apple Spice Thumbprints hold their shape beautifully.
🥥 6. Dairy-Free and Vegan-Friendly
Use dairy-free butter and caramel substitutes to make these cookies vegan without sacrificing texture or flavor. Even plant-based versions of Caramel Apple Spice Thumbprints come out soft, chewy, and full of spice.
🍎 7. Apple Butter Filling
Not a caramel fan? Fill the cookies with spiced apple butter instead. It adds a fruity tang and pairs beautifully with the warm spices in the dough.
No matter which version you try, these variations ensure your Caramel Apple Spice Thumbprints never get boring. Each batch is a chance to explore new flavors and make them truly your own.
Read Also: Apple Cupcakes with Salted Caramel Frosting: 7 Irresistible Tips for Success
Frequently Asked Questions About Caramel Apple Spice Thumbprints
Got questions? Whether you’re baking for the first time or customizing for your dietary needs, these answers will help you master Caramel Apple Spice Thumbprints like a pro.
1. Can I use store-bought caramel instead of homemade?
Absolutely! Just make sure it’s thick enough to stay in place once the cookies bake. Avoid caramel sauces meant for drizzling—they’re usually too runny.
2. What if I don’t have apple pie spice?
No problem. You can easily make your own blend by mixing 4 tsp cinnamon, 2 tsp nutmeg, and 1 tsp cardamom. This homemade mix works beautifully in Caramel Apple Spice Thumbprints.
3. Why did my thumbprint indent disappear while baking?
It’s likely the dough wasn’t chilled long enough. Always chill for at least 2 hours, and if the indent puffs up during baking, gently press it again before adding the caramel.
4. How long do these cookies stay fresh?
Stored in an airtight container at room temperature, Caramel Apple Spice Thumbprints stay fresh for up to 3 days. You can also refrigerate for 1 week or freeze for up to 3 months.
5. Can I freeze the dough or baked cookies?
Yes! Shape and chill the dough, then freeze on a baking sheet before transferring to a zip-top bag. Baked cookies also freeze well—just thaw overnight before serving.
6. Can I make these gluten-free?
Yes, just use a 1:1 gluten-free flour blend with xanthan gum. Chill the dough slightly longer to help it firm up and hold shape.
7. What’s the best caramel to use for the filling?
A homemade caramel made with reduced salt is ideal for this recipe. But you can also use jarred caramel—just make sure it’s spoonable, not pourable.
8. Can I double the recipe?
Absolutely. This recipe scales easily. Just be sure to chill all shaped dough before baking and allow a bit more baking time if using multiple trays.
9. How do I prevent the cookies from cracking when I press the indent?
Roll the dough balls tightly and press gently but firmly. If cracks appear, simply smooth them out with your fingers before baking.
10. Can I use a different filling besides caramel?
Yes! Try apple butter, pumpkin butter, or even nut butters like almond or cashew. Each version brings a new flavor twist to Caramel Apple Spice Thumbprints.
Conclusion: Bake These Caramel Apple Spice Thumbprints Today!
There’s no better way to celebrate fall than with a batch of warm, spiced cookies filled with rich, gooey caramel. Caramel Apple Spice Thumbprints combine everything we love about the season—comforting spices, sweet apples, buttery dough, and that indulgent caramel center.
Whether you’re baking for a cozy night in, gifting a holiday cookie box, or impressing guests at a fall gathering, these cookies never fail to bring smiles. They’re festive, flavorful, and surprisingly easy to make with just a little planning.
Have you tried this Caramel Apple Spice Thumbprints recipe?
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Read Also: Apple Cupcakes with Salted Caramel Frosting: 7 Irresistible Tips for Success


Caramel Apple Spice Thumbprints: 7 Irresistible Reasons to Bake Them Now
- Total Time: 2 hours 45 minutes
- Yield: 24 cookies 1x
Description
These Caramel Apple Spice Thumbprints are the perfect fall cookie—soft, chewy, and warmly spiced, with a gooey caramel center. Inspired by snickerdoodles and apple pie, this festive recipe is easy to make and perfect for holiday trays or cozy baking days.
Ingredients
Topping
1/3 cup (67g) granulated sugar
1/2 teaspoon apple pie spice
Cookie Dough
2 1/2 cups (313g) all-purpose flour
1 1/2 teaspoons apple pie spice
1 teaspoon baking powder
1/4 teaspoon salt
1 cup (226g) unsalted butter, softened
3/4 cup (150g) granulated sugar
1 large egg, room temperature
1 1/2 teaspoons pure vanilla extract
Filling
Homemade caramel sauce (or thick jarred caramel)
Instructions
Mix the topping ingredients (sugar + spice) in a small bowl. Set aside.
Whisk together flour, apple pie spice, baking powder, and salt.
Cream butter and sugar until smooth. Add egg and vanilla; beat to combine.
Gradually mix in dry ingredients until a dough forms.
Roll dough into 1-inch balls, coat in spiced sugar, and place on lined baking sheets.
Press an indent into each cookie using your thumb or a utensil.
Chill shaped cookies for 2–3 hours (or up to 4 days).
Preheat oven to 350°F (180°C).
Bake cookies for 12 minutes, then remove and spoon 1/2 tsp caramel into each indentation.
Bake for 1–2 more minutes.
Cool on sheets for 5 minutes, then transfer to wire rack. Caramel will set in 2–3 hours.
Notes
Make your own apple pie spice: 4 tsp cinnamon, 2 tsp nutmeg, 1 tsp cardamom.
Use thick caramel to avoid spillage.
Cookies freeze well up to 3 months.
Chill dough to avoid spreading and maintain the thumbprint shape.
- Prep Time: 30 minutes (plus 2 hours chill time)
- Cook Time: 15 minutes
- Category: Dessert, Cookies
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 cookie
- Calories: 155
- Sugar: 11g
- Sodium: 60mg
- Fat: 8g
- Saturated Fat: 5g
- Unsaturated Fat: 2g
- Trans Fat: 0g
- Carbohydrates: 18g
- Fiber: 0.5g
- Protein: 1.5g
- Cholesterol: 25mg